Package: permutes 2.7

Cesko C. Voeten

permutes: Permutation Tests for Time Series Data

Helps you determine the analysis window to use when analyzing densely-sampled time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007) <doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints where significance of an effect begins and ends, and the results can be plotted in various types of heatmap for reporting. Mixed-effects models are supported using an implementation of the approach by Lee & Braun (2012) <doi:10.1111/j.1541-0420.2011.01675.x>.

Authors:Cesko C. Voeten [aut, cre]

permutes_2.7.tar.gz
permutes_2.7.zip(r-4.7)permutes_2.7.zip(r-4.6)permutes_2.7.zip(r-4.5)
permutes_2.7.tgz(r-4.6-any)permutes_2.7.tgz(r-4.5-any)
permutes_2.7.tar.gz(r-4.7-any)permutes_2.7.tar.gz(r-4.6-any)
permutes_2.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
permutes/json (API)

# Install 'permutes' in R:
install.packages('permutes', repos = c('https://cvoeten.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/cvoeten/permutes

Datasets:
  • MMN - ERP data from Jager (in prep.). See the vignettes for details.

On CRAN:

Conda:

4.98 score 1 packages 32 scripts 891 downloads 11 exports 2 dependencies

Last updated from:30ff049a8c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK149
source / vignettesOK209
linux-release-x86_64OK119
macos-release-arm64OK104
macos-oldrel-arm64OK117
windows-develOK78
windows-releaseOK107
windows-oldrelOK96
wasm-releaseOK116

Exports:clusterperm.glmclusterperm.glmerclusterperm.glmmTMBclusterperm.lmclusterperm.lmerperm.glmperm.glmerperm.glmmTMBperm.lmperm.lmerpermu.test

Dependencies:plyrRcpp

Analyzing time series data using clusterperm.lmer
Sample data | Determining the window | Interpreting the results | References
Rendered frombuildmer.Rmdusingknitr::rmarkdown

Last update: 2023-09-11
Started: 2021-02-22

Analyzing time series data using permu.test
Sample data | Determining the window and ROI | Running the actual analysis | References
Rendered frompermutes.Rmdusingknitr::rmarkdown

Last update: 2021-09-14
Started: 2017-09-21

Readme and manuals

Help Manual

Help pageTopics
Cluster-based permutation tests for time series data, based on generalized linear models or other 'buildmer' models. This is an alias for 'clusterperm.lm' provided for discoverability.clusterperm.glm
Cluster-based permutation tests for time series data, based on generalized linear mixed-effects models or other 'buildmer' models. This is an alias for 'clusterperm.lmer' provided for discoverability.clusterperm.glmer
Cluster-based permutation tests for time series data, based on 'buildglmmTMB'.clusterperm.glmmTMB
Cluster-based permutation tests for time series data, based on mixed-effects models or other 'buildmer' models. This is an alias for 'clusterperm.lmer', except that random effects are explicily disallowed.clusterperm.lm
Cluster-based permutation tests for time series data, based on mixed-effects models or other 'buildmer' models.clusterperm.lmer
ERP data from Jager (in prep.). See the vignettes for details.MMN
A general permutation test for mixed-effects models or other 'buildmer' models. This is an alias for 'perm.lm' provided for discoverability.perm.glm
A general permutation test for mixed-effects models or other 'buildmer' models. This is an alias for 'perm.lmer' provided for discoverability.perm.glmer
A general permutation test for 'glmmTMB' models.perm.glmmTMB
A general permutation test for mixed-effects models or other 'buildmer' models. This is an alias for 'perm.lmer', except that random effects are explicily disallowed.perm.lm
A general permutation test for mixed-effects models or other 'buildmer' models.perm.lmer
Permutation tests for time series data, based on classic linear regression or ANOVA This is a legacy function that is primarily provided for backward compatibility. You should probably use 'perm.lm' or 'perm.lmer' instead. 'permu.test' is the only function to support multivariate responses, although multivariate data can trivially be recoded into a univariate model. 'permu.test' does not support random effects or corrected p-values (e.g. the cluster mass test), which are supported by 'permutelm'.permu.test
Create a heatmap of the results of cluster-based permutation testing.plot.permutes